Gene detail

Detailed information of OS493_010462-T1 in Lophelia pertusa

Genomic Location: scaffold_25:2252434...2256368
NR annotation: KAJ7392803.1, hypothetical protein OS493_010462 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2HJH8	Cilia- and flagella-associated protein 300 OS=Bos taurus OX=9913 GN=CFAP300 PE=2 SV=1
Q9BRQ4	Cilia- and flagella-associated protein 300 OS=Homo sapiens OX=9606 GN=CFAP300 PE=1 SV=3
Q5I0R4	Cilia- and flagella-associated protein 300 OS=Xenopus tropicalis OX=8364 GN=cfap300 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0090303 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14926 all species →	CFAP300	Cilia- and flagella-associated protein 300	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029416 all species →	Family	Cilia- and flagella-associated protein 300	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_010462-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_010462-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010462-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010462-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

77TPM > 0

7Conditions

14.4Max TPM

1.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	6	1.16	4.83
polyp at pH7 6	18	6	0.90	3.17
coral polyp · control treatment	16	16	2.79	11.59
coral polyp · oil and dispersant treatment	16	15	1.89	14.35
coral polyp · oil treatment	16	15	2.60	4.47
coral polyp · dispersant treatment	16	14	1.16	3.52
Polyp	10	5	0.76	3.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.83
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.28
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.17
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.88
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.66
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.61
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.60
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.82
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.58
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.37
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.23
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.35
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.95
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.89
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.66
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.48
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.36
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.30
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.74
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.88
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.52
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.69
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.93
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.12
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.59
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.