Gene detail

Detailed information of OS493_010480-T1 in Lophelia pertusa

Genomic Location: scaffold_25:2364934...2372333
NR annotation: KAJ7392820.1, hypothetical protein OS493_010480 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5FWM8	Integral membrane protein GPR180 OS=Xenopus laevis OX=8355 GN=gpr180 PE=2 SV=1
Q86V85	Integral membrane protein GPR180 OS=Homo sapiens OX=9606 GN=GPR180 PE=1 SV=1
Q8BPS4	Integral membrane protein GPR180 OS=Mus musculus OX=10090 GN=Gpr180 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008312 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10192 all species →	GpcrRhopsn4	Rhodopsin-like GPCR transmembrane domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019336 all species →	Domain	GPR180/TMEM145, transmembrane domain	Interproscan
IPR047831 all species →	Family	GPR180/TMEM145	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23252 all species →	INTIMAL THICKNESS RECEPTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0019236 all species →	Biological Process	response to pheromone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010480-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010480-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

14.2Max TPM

5.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.13	7.62
polyp at pH7 6	18	16	4.97	8.51
coral polyp · control treatment	16	16	7.57	14.20
coral polyp · oil and dispersant treatment	16	16	6.66	13.35
coral polyp · oil treatment	16	16	6.04	11.44
coral polyp · dispersant treatment	16	16	4.98	10.90
Polyp	10	9	2.83	6.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.26
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.96
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.72
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.51
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.58
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.33
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.01
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.54
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.69
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.20
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.54
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.46
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.78
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.07
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.35
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.95
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.40
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.19
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.13
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.04
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.74
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.59
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.29
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.42
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.20
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.28
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.31
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.70
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.36
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.45
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.13
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.72
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.91
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.