Gene detail

Detailed information of OS493_010505-T1 in Lophelia pertusa

Genomic Location: scaffold_25:2525475...2532015
NR annotation: KAJ7392845.1, carboxylic ester hydrolase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7M370	Arylacetamide deacetylase OS=Oryctolagus cuniculus OX=9986 GN=AADAC PE=1 SV=1
Q0P5B7	Arylacetamide deacetylase OS=Bos taurus OX=9913 GN=AADAC PE=2 SV=1
P22760	Arylacetamide deacetylase OS=Homo sapiens OX=9606 GN=AADAC PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001675 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07859 all species →	Abhydrolase_3	alpha/beta hydrolase fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050300 all species →	Family	'GDXG' lipolytic enzyme	Interproscan
IPR033140 all species →	Active_site	Lipase, GDXG, putative serine active site	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR013094 all species →	Domain	Alpha/beta hydrolase fold-3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48081 all species →	AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016298 all species →	Molecular Function	lipase activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010505-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010505-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

32.9Max TPM

8.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.58	13.87
polyp at pH7 6	18	15	5.47	13.36
coral polyp · control treatment	16	16	11.86	32.90
coral polyp · oil and dispersant treatment	16	16	10.68	20.51
coral polyp · oil treatment	16	16	8.91	23.30
coral polyp · dispersant treatment	16	15	8.52	18.45
Polyp	10	9	4.93	13.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.67
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.59
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.49
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.56
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.27
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.82
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.36
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.30
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.11
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.99
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.88
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.31
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.93
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.50
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.26
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.72
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.04
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.70
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.86
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.31
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.51
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.41
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.80
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.89
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.30
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.24
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.72
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.41
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.36
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.64
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.73
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.22
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.47
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.89
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.48
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.43
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.84
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.