Gene detail

Detailed information of OS493_010695-T1 in Lophelia pertusa

Genomic Location: scaffold_26:2603732...2614417
NR annotation: KAJ7386289.1, hypothetical protein OS493_010695 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P963	Hydroxyacylglutathione hydrolase, mitochondrial OS=Danio rerio OX=7955 GN=hagh PE=2 SV=2
Q99KB8	Hydroxyacylglutathione hydrolase, mitochondrial OS=Mus musculus OX=10090 GN=Hagh PE=1 SV=2
B4F6K2	Hydroxyacylglutathione hydrolase, mitochondrial OS=Xenopus tropicalis OX=8364 GN=hagh PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004231 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16123 all species →	HAGH_C	Hydroxyacylglutathione hydrolase C-terminus	Family	Interproscan
PF00753 all species →	Lactamase_B	Metallo-beta-lactamase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan
IPR035680 all species →	Domain	Hydroxyacylglutathione hydrolase, MBL domain	Interproscan
IPR032282 all species →	Domain	Hydroxyacylglutathione hydrolase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11935 all species →	BETA LACTAMASE DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004416 all species →	Molecular Function	hydroxyacylglutathione hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01069	gloB, gloC, HAGH; hydroxyacylglutathione hydrolase	EC:3.1.2.6	Pyruvate metabolism	ko00620	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010695-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

106.8Max TPM

49.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	63.16	106.82
polyp at pH7 6	18	18	60.92	86.66
coral polyp · control treatment	16	16	44.82	80.99
coral polyp · oil and dispersant treatment	16	16	30.67	43.78
coral polyp · oil treatment	16	16	47.41	72.41
coral polyp · dispersant treatment	16	16	39.11	78.93
Polyp	10	10	56.67	104.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	106.82
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.13
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.38
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.73
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.48
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.43
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.80
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.69
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.25
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.09
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.66
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.35
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.58
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.52
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.16
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.75
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.88
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.17
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.93
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.52
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.45
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.80
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.36
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.99
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.99
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.10
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.94
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.09
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.63
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.20
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.83
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.29
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.62
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.22
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.96
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.17
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.12
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.53
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.84
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.93
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.94
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.04
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.25
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.57
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.51
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.02
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	104.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	94.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	87.49
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	56.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	45.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	41.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	38.58
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	34.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	34.22
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	28.84

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.