Gene detail

Detailed information of OS493_010700-T1 in Lophelia pertusa

Genomic Location: scaffold_26:2687228...2690996
NR annotation: KAJ7386294.1, Forkhead box protein J1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1R8Z9	Forkhead box protein J1-B OS=Danio rerio OX=7955 GN=foxj1b PE=2 SV=1
Q32NH9	Forkhead box protein J1.2 OS=Xenopus laevis OX=8355 GN=foxj1.2 PE=2 SV=1
Q66IG8	Forkhead box protein J1.2 OS=Xenopus tropicalis OX=8364 GN=foxj1.2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007999 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR047512 all species →	Domain	Forkhead box protein J1, forkhead domain	Interproscan
IPR030456 all species →	Conserved_site	Fork head domain conserved site 2	Interproscan
IPR047513 all species →	Family	Forkhead box protein J1	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR018122 all species →	Conserved_site	Fork head domain conserved site1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46805 all species →	FORKHEAD BOX PROTEIN J1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09402	FOXJ1; forkhead box protein J1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010700-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

538.1Max TPM

62.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.66	9.88
polyp at pH7 6	18	18	6.80	11.63
coral polyp · control treatment	16	16	37.18	199.56
coral polyp · oil and dispersant treatment	16	16	54.50	117.51
coral polyp · oil treatment	16	16	27.47	54.60
coral polyp · dispersant treatment	16	16	292.68	538.11
Polyp	10	10	9.03	25.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.91
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.44
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.97
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.77
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.78
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.63
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.82
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.28
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.16
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.06
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	199.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.34
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.78
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.80
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.85
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.90
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.33
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.93
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.91
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	100.79
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.01
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.49
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.37
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.86
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.17
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.97
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.96
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.47
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.60
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.15
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.74
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.98
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.93
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	538.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	530.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	501.97
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	369.16
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	348.40
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	319.60
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	296.11
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	285.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	273.88
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	264.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	230.14
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	204.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	191.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	156.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	137.58
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.91
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	25.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.19
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.16
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.20
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.52

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.