Gene detail

Detailed information of OS493_010737-T1 in Lophelia pertusa

Genomic Location: scaffold_26:3595863...3596969
NR annotation: KAJ7386326.1, hypothetical protein OS493_010737 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004413 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01822 all species →	WSC	WSC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002889 all species →	Domain	Carbohydrate-binding WSC	Interproscan
IPR051836 all species →	Family	Kremen receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24269 all species →	KREMEN PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010737-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010737-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

24.7Max TPM

7.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.73	14.28
polyp at pH7 6	18	18	7.82	16.87
coral polyp · control treatment	16	16	9.63	24.66
coral polyp · oil and dispersant treatment	16	16	6.98	15.86
coral polyp · oil treatment	16	16	9.77	19.88
coral polyp · dispersant treatment	16	16	6.33	14.03
Polyp	10	9	4.28	11.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.32
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.31
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.87
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.35
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.59
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.21
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.67
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.72
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.78
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.69
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.71
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.11
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.65
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.63
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.58
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.90
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.86
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.59
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.02
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.97
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.49
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.40
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.32
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.80
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.04
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.51
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.68
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.26
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.17
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.40
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.23
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.18
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.95
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.