Gene detail

Detailed information of OS493_010762-T1 in Lophelia pertusa

Genomic Location: scaffold_27:180446...181386
NR annotation: KAJ7380055.1, Beta-galactosidase-1-like protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9TRY9	Beta-galactosidase OS=Canis lupus familiaris OX=9615 GN=GLB1 PE=1 SV=3
Q8VC60	Beta-galactosidase-1-like protein OS=Mus musculus OX=10090 GN=Glb1l PE=1 SV=1
P23780	Beta-galactosidase OS=Mus musculus OX=10090 GN=Glb1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000517 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21467 all species →	BetaGal_gal-bd	Beta-galactosidase, galactose-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048913 all species →	Domain	Beta-galactosidase, galactose-binding domain	Interproscan
IPR001944 all species →	Family	Glycoside hydrolase, family 35	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23421 all species →	BETA-GALACTOSIDASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0004565 all species →	Molecular Function	beta-galactosidase activity	Interproscan
GO:0005773 all species →	Cellular Component	vacuole	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010762-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010762-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

67.8Max TPM

31.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	34.38	47.80
polyp at pH7 6	18	18	36.47	50.32
coral polyp · control treatment	16	16	35.84	62.77
coral polyp · oil and dispersant treatment	16	16	31.79	65.21
coral polyp · oil treatment	16	16	32.14	67.80
coral polyp · dispersant treatment	16	16	22.88	46.41
Polyp	10	9	27.32	50.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.80
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.08
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.51
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.80
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.57
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.56
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.31
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.71
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.55
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.52
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.70
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.59
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.67
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.59
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.97
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.59
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.25
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.24
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.99
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.20
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.89
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.78
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.24
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.46
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.78
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.32
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.38
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.15
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.24
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.11
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.08
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.81
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.38
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.80
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.47
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.74
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.19
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.09
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.88
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.06
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.70
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.30
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.10
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.87
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.26
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.56
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.61
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.63
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.44
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	50.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	44.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	43.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	43.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	35.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.67
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.