Gene detail

Detailed information of OS493_010764-T1 in Lophelia pertusa

Genomic Location: scaffold_27:190578...193699
NR annotation: KAJ7380057.1, Ankyrin repeat and zinc finger domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004911 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_010764-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR047139 all species →	Family	tRNA endonuclease ANKZF1/VMS1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16036 all species →	ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010764-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010764-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

357.7Max TPM

30.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	11.87	15.67
polyp at pH7 6	18	16	24.66	68.86
coral polyp · control treatment	16	16	25.29	63.86
coral polyp · oil and dispersant treatment	16	16	41.57	103.84
coral polyp · oil treatment	16	16	20.01	40.03
coral polyp · dispersant treatment	16	16	64.70	357.71
Polyp	10	10	21.91	58.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.67
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.39
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.42
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.59
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.90
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.56
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.04
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.25
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.36
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.55
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.49
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.25
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.83
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.12
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.49
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.08
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.04
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.04
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.89
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.82
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.69
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.03
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.26
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.45
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.20
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.63
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	357.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.35
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.89
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.58
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.30
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.83
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.21
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	58.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	34.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	25.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.84
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	21.31
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.07
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.67
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.59

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.