Detailed information of OS493_010767-T1 in Lophelia pertusa

Genomic Location: scaffold_27:206205...208422
NR annotation: KAJ7380060.1, hypothetical protein OS493_010767 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008695 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for OS493_010767-T1 in Lophelia pertusa.
 InterPro
InterPro termTypeDescriptionSource
IPR033336
all species →		FamilyStabilizer of axonemal microtubules 1/2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31516
all species →		STABILIZER OF AXONEMAL MICROTUBULES 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005856
all species →		Cellular ComponentcytoskeletonInterproscan
GO:0008017
all species →		Molecular Functionmicrotubule bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_010767-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010767-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples
107TPM > 0
7Conditions
54.2Max TPM
9.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
polyp at pH7 9 18 18 5.73 14.88
polyp at pH7 6 18 16 4.95 8.62
coral polyp · control treatment 16 16 13.77 54.16
coral polyp · oil and dispersant treatment 16 16 9.35 14.87
coral polyp · oil treatment 16 16 11.10 21.44
coral polyp · dispersant treatment 16 16 12.81 33.44
Polyp 10 9 4.09 9.69

Per sample · hover a bar for the full sample record

Show the sample table (110 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR11359523 polyp at pH7 9 not recorded not recorded not recorded - 14.88
SRR11359522 polyp at pH7 9 not recorded not recorded not recorded - 14.51
SRR11359518 polyp at pH7 9 not recorded not recorded not recorded - 12.42
SRR11359520 polyp at pH7 9 not recorded not recorded not recorded - 9.20
SRR11359519 polyp at pH7 9 not recorded not recorded not recorded - 7.45
SRR11359521 polyp at pH7 9 not recorded not recorded not recorded - 6.62
SRR11359511 polyp at pH7 9 not recorded not recorded not recorded - 5.55
SRR11359510 polyp at pH7 9 not recorded not recorded not recorded - 5.04
SRR11359509 polyp at pH7 9 not recorded not recorded not recorded - 4.79
SRR11359498 polyp at pH7 9 not recorded not recorded not recorded - 3.92
SRR11359499 polyp at pH7 9 not recorded not recorded not recorded - 3.11
SRR11359508 polyp at pH7 9 not recorded not recorded not recorded - 3.08
SRR11359497 polyp at pH7 9 not recorded not recorded not recorded - 2.59
SRR11359496 polyp at pH7 9 not recorded not recorded not recorded - 2.56
SRR11359495 polyp at pH7 9 not recorded not recorded not recorded - 2.19
SRR11359507 polyp at pH7 9 not recorded not recorded not recorded - 2.13
SRR11359494 polyp at pH7 9 not recorded not recorded not recorded - 1.54
SRR11359506 polyp at pH7 9 not recorded not recorded not recorded - 1.52
SRR11359525 polyp at pH7 6 not recorded not recorded not recorded - 8.62
SRR11359515 polyp at pH7 6 not recorded not recorded not recorded - 8.07
SRR11359527 polyp at pH7 6 not recorded not recorded not recorded - 7.77
SRR11359526 polyp at pH7 6 not recorded not recorded not recorded - 7.77
SRR11359524 polyp at pH7 6 not recorded not recorded not recorded - 6.31
SRR11359514 polyp at pH7 6 not recorded not recorded not recorded - 6.23
SRR11359528 polyp at pH7 6 not recorded not recorded not recorded - 6.12
SRR11359529 polyp at pH7 6 not recorded not recorded not recorded - 5.99
SRR11359501 polyp at pH7 6 not recorded not recorded not recorded - 5.17
SRR11359513 polyp at pH7 6 not recorded not recorded not recorded - 5.14
SRR11359504 polyp at pH7 6 not recorded not recorded not recorded - 4.48
SRR11359505 polyp at pH7 6 not recorded not recorded not recorded - 4.07
SRR11359517 polyp at pH7 6 not recorded not recorded not recorded - 3.88
SRR11359516 polyp at pH7 6 not recorded not recorded not recorded - 3.81
SRR11359502 polyp at pH7 6 not recorded not recorded not recorded - 3.34
SRR11359503 polyp at pH7 6 not recorded not recorded not recorded - 2.37
SRR11359500 polyp at pH7 6 not recorded not recorded not recorded - 0.00
SRR11359512 polyp at pH7 6 not recorded not recorded not recorded - 0.00
SRR16705990 coral polyp · control treatment coral polyp polyp control treatment SRP344271 54.16
SRR16705965 coral polyp · control treatment coral polyp polyp control treatment SRP344271 24.34
SRR16705972 coral polyp · control treatment coral polyp polyp control treatment SRP344271 17.69
SRR16705989 coral polyp · control treatment coral polyp polyp control treatment SRP344271 15.48
SRR16705974 coral polyp · control treatment coral polyp polyp control treatment SRP344271 13.89
SRR16705942 coral polyp · control treatment coral polyp polyp control treatment SRP344271 13.78
SRR16705971 coral polyp · control treatment coral polyp polyp control treatment SRP344271 11.02
SRR16705946 coral polyp · control treatment coral polyp polyp control treatment SRP344271 10.95
SRR16705991 coral polyp · control treatment coral polyp polyp control treatment SRP344271 10.35
SRR16705992 coral polyp · control treatment coral polyp polyp control treatment SRP344271 9.57
SRR16705960 coral polyp · control treatment coral polyp polyp control treatment SRP344271 8.94
SRR16705973 coral polyp · control treatment coral polyp polyp control treatment SRP344271 7.28
SRR16705943 coral polyp · control treatment coral polyp polyp control treatment SRP344271 6.79
SRR16705970 coral polyp · control treatment coral polyp polyp control treatment SRP344271 6.35
SRR16705957 coral polyp · control treatment coral polyp polyp control treatment SRP344271 4.92
SRR16705975 coral polyp · control treatment coral polyp polyp control treatment SRP344271 4.81
SRR16705995 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 14.87
SRR16705978 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 14.76
SRR16705993 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 12.31
SRR16706004 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 11.36
SRR16705976 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 11.15
SRR16705944 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 10.88
SRR16705977 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 10.41
SRR16706005 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 10.05
SRR16705945 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 9.69
SRR16705979 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 8.66
SRR16705947 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 7.98
SRR16705997 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 7.56
SRR16705948 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 6.98
SRR16705996 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 4.91
SRR16705982 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 4.45
SRR16705994 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 3.53
SRR16705981 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 21.44
SRR16706001 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 20.32
SRR16705999 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 18.45
SRR16706000 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 14.81
SRR16705984 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 14.75
SRR16705983 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 13.81
SRR16705949 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 11.78
SRR16705951 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 10.99
SRR16705950 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 10.43
SRR16705961 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 9.64
SRR16705952 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 8.53
SRR16705963 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 6.74
SRR16705964 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 5.31
SRR16705998 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 4.80
SRR16705980 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 4.79
SRR16705962 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 1.01
SRR16705987 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 33.44
SRR16705958 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 21.25
SRR16706002 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 18.52
SRR16706003 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 17.69
SRR16705959 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 17.10
SRR16705988 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 13.79
SRR16705968 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 11.90
SRR16705956 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 11.35
SRR16705955 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 11.07
SRR16705954 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 10.68
SRR16705969 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 9.39
SRR16705967 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 9.16
SRR16705966 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 9.12
SRR16705986 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 6.37
SRR16705985 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 3.09
SRR16705953 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 1.03
SRR23025711 Polyp not recorded not recorded not recorded - 9.69
SRR23025713 Polyp not recorded not recorded not recorded - 6.83
SRR23025712 Polyp not recorded not recorded not recorded - 5.83
SRR23025709 Polyp not recorded not recorded not recorded - 4.60
SRR23025710 Polyp not recorded not recorded not recorded - 4.08
SRR7746667 Polyp not recorded not recorded not recorded - 3.26
SRR7746668 Polyp not recorded not recorded not recorded - 3.20
SRR7746666 Polyp not recorded not recorded not recorded - 1.88
SRR23025708 Polyp not recorded not recorded not recorded - 1.55
SRR7746669 Polyp not recorded not recorded not recorded - 0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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