Gene detail

Detailed information of OS493_010806-T1 in Lophelia pertusa

Genomic Location: scaffold_27:613278...623400
NR annotation: KAJ7380096.1, hypothetical protein OS493_010806 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P40757	Allantoinase, mitochondrial OS=Aquarana catesbeiana OX=8400 GN=ALN PE=1 SV=1
Q54SV3	Probable allantoinase 1 OS=Dictyostelium discoideum OX=44689 GN=allB1 PE=3 SV=1
Q9RKU5	Allantoinase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=allB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009643 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01979 all species →	Amidohydro_1	Amidohydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050138 all species →	Family	Dihydroorotase/Allantoinase Hydrolase	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan
IPR017593 all species →	Family	Allantoinase	Interproscan
IPR011059 all species →	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR002195 all species →	Conserved_site	Dihydroorotase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43668 all species →	ALLANTOINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004038 all species →	Molecular Function	allantoinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006145 all species →	Biological Process	purine nucleobase catabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0000256 all species →	Biological Process	allantoin catabolic process	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0050897 all species →	Molecular Function	cobalt ion binding	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0016812 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01466	allB; allantoinase	EC:3.5.2.5	Purine metabolism	ko00230	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010806-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

33.6Max TPM

12.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.30	12.64
polyp at pH7 6	18	18	9.92	18.10
coral polyp · control treatment	16	16	17.31	27.36
coral polyp · oil and dispersant treatment	16	16	11.79	17.28
coral polyp · oil treatment	16	16	13.59	26.38
coral polyp · dispersant treatment	16	16	14.75	33.61
Polyp	10	9	6.81	15.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.64
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.45
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.27
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.09
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.40
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.30
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.39
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.54
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.55
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.39
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.11
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.10
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.99
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.80
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.44
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.53
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.30
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.68
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.46
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.11
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.94
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.51
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.29
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.79
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.77
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.98
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.69
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.24
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.28
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.66
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.65
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.79
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.45
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.67
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.36
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.04
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.19
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.50
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.88
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.92
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.52
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.34
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.92
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.