Gene detail

Detailed information of OS493_010844-T1 in Lophelia pertusa

Genomic Location: scaffold_27:1009403...1020745
NR annotation: KAJ7380133.1, Metaxin-2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75431	Metaxin-2 OS=Homo sapiens OX=9606 GN=MTX2 PE=1 SV=1
Q2L969	Metaxin-2 OS=Sus scrofa OX=9823 GN=MTX2 PE=2 SV=1
O88441	Metaxin-2 OS=Mus musculus OX=10090 GN=Mtx2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007841 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17172 all species →	GST_N_4	Glutathione S-transferase N-terminal domain	Domain	Interproscan
PF17171 all species →	GST_C_6	Glutathione S-transferase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050931 all species →	Family	Mitochondrial Protein Transport Metaxin	Interproscan
IPR012336 all species →	Domain	Thioredoxin-like fold	Interproscan
IPR033468 all species →	Domain	Metaxin, glutathione S-transferase domain	Interproscan
IPR036282 all species →	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12289 all species →	METAXIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001401 all species →	Cellular Component	SAM complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010844-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010844-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

38.4Max TPM

18.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.80	24.70
polyp at pH7 6	18	18	17.06	28.47
coral polyp · control treatment	16	16	20.60	38.43
coral polyp · oil and dispersant treatment	16	16	16.09	23.07
coral polyp · oil treatment	16	16	19.70	25.84
coral polyp · dispersant treatment	16	16	16.96	27.89
Polyp	10	10	22.50	29.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.70
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.05
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.57
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.38
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.02
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.81
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.52
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.06
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.88
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.51
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.65
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.05
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.99
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.55
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.99
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.90
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.25
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.69
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.11
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.16
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.15
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.29
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.15
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.54
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.72
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.45
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.78
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.23
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.06
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.78
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.84
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.64
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.81
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.73
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.38
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.09
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.93
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.77
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.38
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.80
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.89
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.74
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.10
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.34
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.82
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	29.32
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	25.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.87
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	23.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	22.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.93
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.71
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.56

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.