Gene detail

Detailed information of OS493_010882-T1 in Lophelia pertusa

Genomic Location: scaffold_27:1302157...1306302
NR annotation: KAJ7380171.1, negative regulation of DNA damage response, signal transduction by p53 class mediator [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001276 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_010882-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR052304 all species →	Family	Pituitary tumor-transforming gene 1 protein-interacting	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15191 all species →	PROTEIN CBG20567	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26099	PTTG1IP; PTTG1-interacting protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010882-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

104.7Max TPM

36.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	39.34	72.56
polyp at pH7 6	18	18	39.86	91.83
coral polyp · control treatment	16	16	42.04	104.72
coral polyp · oil and dispersant treatment	16	16	34.68	97.63
coral polyp · oil treatment	16	16	30.01	48.13
coral polyp · dispersant treatment	16	16	31.89	70.17
Polyp	10	10	31.75	76.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.56
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.67
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.10
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.03
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.45
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.12
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	91.83
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.41
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.20
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.76
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.98
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.96
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.65
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.68
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.08
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.68
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.45
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.35
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.29
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.63
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.48
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.21
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.35
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.70
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.62
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.79
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.21
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.13
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.37
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.81
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.95
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.69
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.89
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.69
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.79
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.01
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.17
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	76.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	71.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	48.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.68
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.40
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.13

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.