Gene detail

Detailed information of OS493_010913-T1 in Lophelia pertusa

Genomic Location: scaffold_27:1616798...1629166
NR annotation: KAJ7380201.1, Serine/threonine-protein kinase Nek10 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_010913-T1

ATGACCTCGATGGTTGGAACAATATTATATTCATGTCCTGAAGTTTTGCAAAGCCAGCCTTATGGCGAGAAAGCAGACGTTTGGGCGTCAGGCTGTATTCTCTATCAAATGGCAACTCTTCAACCGCCATTTTATTCATCTAACATGCTAGCTCTAGCTACCAAGATCGTAGAAGCTCAGTATGAGCCCATTCCTCCTGGACATTACTCCGACAAGCTATCAGAGACGGTACAAAGATGCCTGTCACCGAACCCTGATGGAAGACCGGATATTGTCCAGGTTGCTGCTAACATCAGTGAAATCATGCTGCTTTATGTGGACAAATTACGATCCCACGAGATCAGCTTGGAAAAGAAACTAGAGAGGGAAAGAAAACGAACACAACGACATTACATCGAGGCAACTCGCAACATGCAGAACTACCATCGCCTCTTCTGGGCTTCACAAGAACGCTACGACAAACTTGTGAACCTTTCAAGTAGTGGAGGAGCCGCTGGCTTCAGGACCGTGGACATCCCTGAAGGCAGTGACACCGTGTTCGAAGCGGCGAGTGCTTTAGCTGATTCAAACAAGAACGGTGTTCATAAAAACGGCGAGACGGAGCCTGCACCCCAGGTGGACTCTGGGATAGATATTGGTGGGGATGTTCAAGCGAACGGAGGCCTGGGCTCCAGTACGAGATCACCGGAACAAAATAATAATAATGGCGGTTCGAAGCATGAAAGTAACTCGTCACCAGGCTTGTCGCGACGGCAACGAACTCTAAAGCCAGTCACGGATAAATCAACTAGTAAAGGAAGCGTTGAGAAATCCTCGAGTAGTGGTAAAGACAATAAAGAGAAGCCCTCGCCGAGCGGTAGAACAGCCACGGAAAAAACGCAAAATGGAAGAACTATTGTCGAGAAGACGAGCGCTAATTCTTCCACGTCTAATTCTCATGTATTCACGGTGCCCAAGCCCCCGGGGCCACGCAAGGGCGCGCGGAGACCACTGCATGTTGATTTTGCGGTCAGCAGTAAAGCTGGGACGTCGAATGGTGCGAACACGAGTACCGTGACACATGGCGTGACTTCATCCGGGATTTCTGCTTCTGGGATAAGTGAATCTACATCCAGAAGAACGCAGAGCAGCTCCTCAGTGGAAATGTACAGACGACAAACTAGCGGACAGTTAAAAGCAAGACCTCCCACTGCTGCAGCAACTCTCAGTATATCTCCTCGCAAAGTTCGTCAAATAATCGATCCCATCTCACAAATCCTCAATCAACTTCACAAGATAATCTTCATAACGCAGTTACCCCCAACGCTATCGCCCAATCCACAAAGAAGAATTGTAGAACAATTCAAGAGAGCTTTGTTTGCTCCACAAAACAGCTCTTTCGTCAATCTCAAAAGCGAAGTCAAAAAGGTGATCGAGGGCTCAAGAGAAGTAATCGACCTTAAATTCGGCTTCGGAGATCCTACGTTCCTGCATCATCAGCAGGATACCGCTGACAAGTTAGTGAGCGGGGTAAATCTGGAATCTGCCGACGGTCAGGAAATTGGAATTACTTATGAGATGATGCAGAATATAATTGAAAACGTTCTCATGGAGAGCGGCTATTATGATATGTCTCCATGTGCGAGAAACCGGACAGTTCCTCTAGGTCCTATTGGCACGTTGATTAGACTGATCATAGTGTCTTCCAGCACGAACATGATCACCATTGGGAGCCTCATCCGAAAAGACCTGAACAAGGCATATTTTCTTCCACAGCAACCTTCTTCGTATTCCAAAGGATACAGGTTTCAGAACGACACAAAATACCGAATGTTCGATTCGCCTCCTCCTGCCTTGAGTTTCAATCAAGTTCTGTTTCCGTTGCGAAATCTCCCGACCGCCGGCGATAAAATTCCCGTAATCATGGACCATAAGCCGCCATGGTACTTGCAGAAACACTGGCAAAAATGGCTCCCAGCTTTCTCAGAGGCAACCGTCAAGTCAGTCGATGAAGCTCTCCAGGACGATGTTCCAATTGTAACATCGGCAGCCCTGCAAGGCATCCCAGAACACAAGCACAGCATTGATCCAGATGTCATGTACAAGATGCAGCTGAAAAGCTCTATACTTGATATTGGAGTGCCGATTCCAAGGCATATGGACGAAAACAGCATTTCTTATCCATGTGCGGTCAAAGCTGATATGGGTTGGGCCGGACGGGGAAATCGGCTCGTTCAAAACGCCAGCGAGCTTTCTGCCACGTTACGAGACATCAGAGAAACGTGTGGTTGGAAGGGAGGGATTGTGTTCCAAGAGTTCCTTCCAGGAGTCGAGGAAGTGCCAAGCTTCATGTTTCATCTGGACAAAGCTGGTGAAATCTTCTGGCTTGGTACAACATTGGGGATATTCGATGTATTTGAATGGACGGGTGGAACTGTTGACTGGGGCAAGCAAGACGAGTACAGAGACCTGGTGTACGAAGACTTCACGGTGCCCATCAAAAATTACCTTCATAAGAACGGCTACTTTGGTATCGTGTCGTTCGAAGTGCTATTCACAGCTCGTGGAAAGTACCTGGTCGATTTGAACCCAAGAGTCGCTGGTGAAACGTCGCACTTATTGCTGGCTCGTTACATGGCCTCCGAAGTGGGATTGAAACACTCCGCAATGTTTAGTGAAAATACCCACAACATGACACGTGAAAGGCTGGTGGAGAAGGCAAACGAAATCAACGCAAGGAACCTGGGAGTGGGACAAATTATTATACTGGCTGCTGCAGAGGAGGATAATGGCAGCTGTTATTCTGATGTGTCCGTCTTTGCCAAGACCCCTGATGATGTTCAATTTCTTTTTAAGAAACTCGATTTTGCAAGATCGAGAAGTTATTCAGGGCCTGTTTGTATTTAA

Transcript

OS493_010913-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZWH5	Serine/threonine-protein kinase Nek10 OS=Homo sapiens OX=9606 GN=NEK10 PE=1 SV=3
Q3UGM2	Serine/threonine-protein kinase Nek10 OS=Mus musculus OX=10090 GN=Nek10 PE=2 SV=2
P84199	Serine/threonine-protein kinase D1044.8 OS=Caenorhabditis elegans OX=6239 GN=nekl-4 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001168 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02655 all species →	ATP-grasp_3	ATP-grasp domain	Family	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR053269 all species →	Family	L-aspartate--L-methionine ligase	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR003806 all species →	Domain	ATP-grasp fold, PylC-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37018 all species →	CULTURE SPECIFIC PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G00130)-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010913-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_010913-T1 global co-expression network