Detailed information of OS493_010917-T1 in Lophelia pertusa

Genomic Location: scaffold_27:1683522...1685733
NR annotation: KAJ7380205.1, Integrin beta-1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P11584Integrin beta-PS OS=Drosophila melanogaster OX=7227 GN=mys PE=1 SV=3
P12606Integrin beta-1-A OS=Xenopus laevis OX=8355 GN=itgb1-a PE=2 SV=1
P53712Integrin beta-1 OS=Bos taurus OX=9913 GN=ITGB1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000809 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08725
all species →		Integrin_b_cytIntegrin beta cytoplasmic domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015812
all species →		FamilyIntegrin beta subunitInterproscan
IPR014836
all species →		DomainIntegrin beta subunit, cytoplasmic domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10082
all species →		INTEGRIN BETA SUBUNITInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005178
all species →		Molecular Functionintegrin bindingInterproscan
GO:0005925
all species →		Cellular Componentfocal adhesionInterproscan
GO:0007160
all species →		Biological Processcell-matrix adhesionInterproscan
GO:0007229
all species →		Biological Processintegrin-mediated signaling pathwayInterproscan
GO:0008305
all species →		Cellular Componentintegrin complexInterproscan
GO:0009986
all species →		Cellular Componentcell surfaceInterproscan
GO:0016477
all species →		Biological Processcell migrationInterproscan
GO:0033627
all species →		Biological Processcell adhesion mediated by integrinInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_010917-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_010917-T1 global co-expression network
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