Gene detail

Detailed information of OS493_010938-T1 in Lophelia pertusa

Genomic Location: scaffold_27:1854629...1865725
NR annotation: KAJ7380223.1, DnaJ sub B member 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P642	DnaJ homolog subfamily B member 6 OS=Xenopus tropicalis OX=8364 GN=dnajb6 PE=2 SV=1
O35723	DnaJ homolog subfamily B member 3 OS=Mus musculus OX=10090 GN=Dnajb3 PE=2 SV=1
Q5FWN8	DnaJ homolog subfamily B member 6-A OS=Xenopus laevis OX=8355 GN=dnajb6-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002729 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018253 all species →	Conserved_site	DnaJ domain, conserved site	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR043183 all species →	Family	DnaJ homolog subfamily B member 2/6-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45168 all species →	DNAJ HOMOLOG SUBFAMILY B MEMBER 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030544 all species →	Molecular Function	Hsp70 protein binding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0061077 all species →	Biological Process	chaperone-mediated protein folding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09512	DNAJB6; DnaJ homolog subfamily B member 6	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010938-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

102.5Max TPM

38.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	23.61	33.28
polyp at pH7 6	18	18	26.90	39.77
coral polyp · control treatment	16	16	48.58	99.72
coral polyp · oil and dispersant treatment	16	16	57.62	102.53
coral polyp · oil treatment	16	16	42.56	70.13
coral polyp · dispersant treatment	16	16	40.64	74.22
Polyp	10	10	26.66	50.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.15
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.64
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.60
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.50
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.62
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.70
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.52
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.30
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.35
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.90
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.93
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.43
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.26
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.81
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.87
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.55
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.55
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.18
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.50
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.30
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.73
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.10
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.54
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.60
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.53
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.80
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.12
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.83
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.17
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.55
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.16
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.50
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.86
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.54
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.34
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.90
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.82
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.69
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.66
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.22
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.59
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.84
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.51
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.28
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.14
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.67
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.52
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	50.13
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	39.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	29.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.60
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.32
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	20.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.40

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.