Gene detail

Detailed information of OS493_010949-T1 in Lophelia pertusa

Genomic Location: scaffold_27:2088081...2090427
NR annotation: KAJ7380234.1, NUDIX domain [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BG93	Nucleotide triphosphate diphosphatase NUDT15 OS=Mus musculus OX=10090 GN=Nudt15 PE=1 SV=1
Q9NV35	Nucleotide triphosphate diphosphatase NUDT15 OS=Homo sapiens OX=9606 GN=NUDT15 PE=1 SV=1
Q9CA40	Nudix hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=NUDT1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010676 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00293 all species →	NUDIX	NUDIX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000086 all species →	Domain	NUDIX hydrolase domain	Interproscan
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan
IPR020084 all species →	Conserved_site	NUDIX hydrolase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16099 all species →	8-OXO-DGTP DIPHOSPHATES NUDT15	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006203 all species →	Biological Process	dGTP catabolic process	Interproscan
GO:0035539 all species →	Molecular Function	8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03574	mutT, NUDT15, MTH2; 8-oxo-dGTP diphosphatase	EC:3.6.1.55	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010949-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

98TPM > 0

7Conditions

14.2Max TPM

3.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	4.16	11.04
polyp at pH7 6	18	15	4.38	10.56
coral polyp · control treatment	16	16	2.43	11.49
coral polyp · oil and dispersant treatment	16	13	1.22	3.64
coral polyp · oil treatment	16	15	2.39	6.89
coral polyp · dispersant treatment	16	13	1.53	4.32
Polyp	10	10	6.41	14.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.73
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.95
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.03
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.70
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.56
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.08
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.45
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.25
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.17
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.49
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.61
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.99
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.97
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.36
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.80
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.64
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.95
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.72
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.61
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.58
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.26
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.38
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.29
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.32
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.68
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.25
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.60
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.90
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.82

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.