Gene detail

Detailed information of OS493_010954-T1 in Lophelia pertusa

Genomic Location: scaffold_27:2136519...2137529
NR annotation: KAJ7380239.1, hypothetical protein OS493_010954 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010786 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07969 all species →	Amidohydro_3	Amidohydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013108 all species →	Domain	Amidohydrolase 3	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22642 all species →	IMIDAZOLONEPROPIONASE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_010954-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010954-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010954-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

54.7Max TPM

8.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.04	24.89
polyp at pH7 6	18	18	11.38	32.70
coral polyp · control treatment	16	16	6.72	21.31
coral polyp · oil and dispersant treatment	16	16	5.84	27.21
coral polyp · oil treatment	16	16	4.90	12.73
coral polyp · dispersant treatment	16	15	8.48	54.65
Polyp	10	10	6.97	25.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.30
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.57
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.15
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.51
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.13
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.15
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.45
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.07
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.93
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.66
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.96
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.93
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.32
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.25
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.31
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.11
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.03
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.81
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.54
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.73
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.23
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.63
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.83
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.12
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.73
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.83
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.55
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.95
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.70
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.65
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.46
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.85
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.01
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.77
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	25.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.32
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.70
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.39
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.78
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.