Gene detail

Detailed information of OS493_010986-T1 in Lophelia pertusa

Genomic Location: scaffold_27:2606412...2608802
NR annotation: KAJ7380270.1, Kinesin-like protein kif24 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5T7B8	Kinesin-like protein KIF24 OS=Homo sapiens OX=9606 GN=KIF24 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002217 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_010986-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR027640 all species →	Family	Kinesin-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47971 all species →	KINESIN-RELATED PROTEIN 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0007019 all species →	Biological Process	microtubule depolymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010986-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010986-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

31.0Max TPM

8.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.68	12.67
polyp at pH7 6	18	18	9.48	17.33
coral polyp · control treatment	16	16	9.24	30.98
coral polyp · oil and dispersant treatment	16	16	4.85	9.35
coral polyp · oil treatment	16	16	8.83	15.05
coral polyp · dispersant treatment	16	16	3.61	10.43
Polyp	10	9	12.58	23.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.73
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.66
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.80
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.67
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.97
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.15
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.40
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.02
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.44
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.99
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.65
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.15
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.97
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.76
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.87
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.82
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.52
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.45
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.19
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.13
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.04
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.97
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.05
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.82
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.23
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.07
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.85
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.40
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.03
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.43
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.10
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.16
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.64
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.60
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.09
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.47
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.94
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.75
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.24
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.