Gene detail

Detailed information of OS493_011028-T1 in Lophelia pertusa

Genomic Location: scaffold_27:3236927...3248222
NR annotation: KAJ7380308.1, Set1/Ash2 histone methyltransferase complex subunit ASH2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91X20	Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Mus musculus OX=10090 GN=Ash2l PE=1 SV=1
Q9UBL3	Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Homo sapiens OX=9606 GN=ASH2L PE=1 SV=1
Q94545	Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Drosophila melanogaster OX=7227 GN=ash2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005315 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR037353 all species →	Family	Histone methyltransferase complex subunit ASH2	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10598 all species →	SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0048188 all species →	Cellular Component	Set1C/COMPASS complex	Interproscan
GO:0051568 all species →	Biological Process	obsolete histone H3-K4 methylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14964	ASH2; Set1/Ash2 histone methyltransferase complex subunit ASH2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011028-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

36.0Max TPM

9.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.69	12.03
polyp at pH7 6	18	18	10.85	17.35
coral polyp · control treatment	16	16	11.58	34.79
coral polyp · oil and dispersant treatment	16	16	8.94	36.01
coral polyp · oil treatment	16	16	10.40	17.12
coral polyp · dispersant treatment	16	16	7.75	16.85
Polyp	10	10	10.41	18.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.73
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.69
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.27
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.73
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.08
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.06
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.06
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.74
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.59
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.42
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.12
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.37
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.36
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.18
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.97
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.46
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.28
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.02
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.88
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.79
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.76
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.65
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.73
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.11
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.75
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.16
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.87
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.01
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.91
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.84
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.58
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.70
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.42
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.71
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.68
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.72
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.98
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.83
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.91
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.10
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.60
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.77
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.68
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.37
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.02
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.33

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.