Detailed information of OS493_011102-T1 in Lophelia pertusa

Genomic Location: scaffold_28:372754...374073
NR annotation: KAJ7373505.1, hypothetical protein OS493_011102 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O73689Zinc finger protein ZIC 1 OS=Xenopus laevis OX=8355 GN=zic1 PE=2 SV=1
Q9IB89Zinc finger protein ZIC 5 OS=Xenopus laevis OX=8355 GN=zic5 PE=2 SV=1
P46684Zinc finger protein ZIC 1 OS=Mus musculus OX=10090 GN=Zic1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001009 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00096
all species →		zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF18366
all species →		zf_ZICZic proteins zinc finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR041643
all species →		DomainZIC protein, zinc finger domainInterproscan
IPR043359
all species →		FamilyC2H2-type zinc-finger protein GLI-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45718
all species →		TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUSInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000977
all species →		Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_011102-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_011102-T1 global co-expression network
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