Gene detail

Detailed information of OS493_011117-T1 in Lophelia pertusa

Genomic Location: scaffold_28:456370...457653
NR annotation: KAJ7373517.1, hypothetical protein OS493_011117 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P12981	Transcription factor Jun OS=Coturnix japonica OX=93934 GN=JUN PE=2 SV=1
P18870	Transcription factor Jun OS=Gallus gallus OX=9031 GN=JUN PE=1 SV=2
P54864	Transcription factor Jun OS=Serinus canaria OX=9135 GN=JUN PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010985 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00170 all species →	bZIP_1	bZIP transcription factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002112 all species →	Family	Transcription factor Jun	Interproscan
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan
IPR050946 all species →	Family	AP-1 Transcription Factor bZIP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11462 all species →	JUN TRANSCRIPTION FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0042127 all species →	Biological Process	regulation of cell population proliferation	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011117-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_011117-T1 global co-expression network