Gene detail

Detailed information of OS493_011125-T1 in Lophelia pertusa

Genomic Location: scaffold_28:589786...591012
NR annotation: KAJ7373525.1, hypothetical protein OS493_011125 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009684 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05705 all species →	DUF829	Eukaryotic protein of unknown function (DUF829)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008547 all species →	Family	Protein of unknown function DUF829, TMEM53	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20908 all species →	LD15586P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017171 all species →	Molecular Function	serine hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011125-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011125-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

28.2Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.97	28.20
polyp at pH7 6	18	18	10.28	22.37
coral polyp · control treatment	16	16	5.91	14.86
coral polyp · oil and dispersant treatment	16	16	3.80	8.00
coral polyp · oil treatment	16	16	6.59	17.52
coral polyp · dispersant treatment	16	16	5.01	11.28
Polyp	10	8	3.92	6.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.22
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.79
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.36
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.43
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.76
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.48
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.92
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.37
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.15
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.13
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.17
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.71
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.64
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.69
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.60
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.86
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.25
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.69
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.33
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.67
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.48
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.99
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.85
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.72
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.47
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.80
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.71
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.95
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.72
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.86
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.56
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.44
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.21
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.46
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.