Gene detail

Detailed information of OS493_011146-T1 in Lophelia pertusa

Genomic Location: scaffold_28:892148...895292
NR annotation: KAJ7373544.1, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZHN9	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial OS=Gallus gallus OX=9031 GN=PGS1 PE=2 SV=1
Q2KJ28	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial OS=Bos taurus OX=9913 GN=PGS1 PE=2 SV=2
Q9Z2Z7	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial OS=Cricetulus griseus OX=10029 GN=PGS1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005797 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_011146-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR016270 all species →	Family	CDP-alcohol phosphatidyltransferase class-II family	Interproscan
IPR001736 all species →	Domain	Phospholipase D/Transphosphatidylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12586 all species →	CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0008444 all species →	Molecular Function	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity	Interproscan
GO:0032049 all species →	Biological Process	cardiolipin biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011146-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011146-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

18.7Max TPM

5.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.43	8.61
polyp at pH7 6	18	18	5.83	10.19
coral polyp · control treatment	16	16	7.66	17.19
coral polyp · oil and dispersant treatment	16	16	5.91	18.69
coral polyp · oil treatment	16	16	6.26	13.98
coral polyp · dispersant treatment	16	15	3.10	6.08
Polyp	10	10	3.79	7.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.61
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.68
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.86
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.66
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.68
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.51
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.37
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.61
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.38
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.22
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.22
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.44
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.40
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.19
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.81
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.50
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.02
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.43
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.69
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.61
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.92
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.41
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.62
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.23
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.98
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.36
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.55
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.82
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.06
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.48
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.07
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.46
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.89
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.44
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.12
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.48
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.92
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.62

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.