Gene detail

Detailed information of OS493_011167-T1 in Lophelia pertusa

Genomic Location: scaffold_28:1106460...1113255
NR annotation: KAJ7373564.1, hypothetical protein OS493_011167 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009773 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05241 all species →	EBP	EXPERA (EXPanded EBP superfamily)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033118 all species →	Domain	EXPERA domain	Interproscan
IPR007905 all species →	Family	Emopamil-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14207 all species →	STEROL ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000247 all species →	Molecular Function	C-8 sterol isomerase activity	Interproscan
GO:0004769 all species →	Molecular Function	steroid delta-isomerase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006695 all species →	Biological Process	cholesterol biosynthetic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016125 all species →	Biological Process	sterol metabolic process	Interproscan
GO:0016126 all species →	Biological Process	sterol biosynthetic process	Interproscan
GO:0047750 all species →	Molecular Function	cholestenol delta-isomerase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01824	EBP; cholestenol Delta-isomerase	EC:5.3.3.5	Steroid biosynthesis	ko00100	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011167-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

17.2Max TPM

6.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.79	15.98
polyp at pH7 6	18	18	8.76	15.08
coral polyp · control treatment	16	15	5.53	13.31
coral polyp · oil and dispersant treatment	16	15	3.40	12.92
coral polyp · oil treatment	16	16	5.67	12.50
coral polyp · dispersant treatment	16	16	5.89	17.20
Polyp	10	9	4.11	7.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.98
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.11
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.52
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.26
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.97
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.92
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.39
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.24
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.18
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.46
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.79
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.08
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.40
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.16
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.04
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.20
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.78
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.76
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.22
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.92
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.84
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.90
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.62
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.94
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.02
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.55
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.20
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.14
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.54
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.91
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.67
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.94
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.72
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.69
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.