Gene detail

Detailed information of OS493_011186-T1 in Lophelia pertusa

Genomic Location: scaffold_28:1371119...1372672
NR annotation: KAJ7373581.1, hypothetical protein OS493_011186 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001409 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04199 all species →	Cyclase	Putative cyclase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007325 all species →	Family	Kynurenine formamidase/cyclase-like	Interproscan
IPR037175 all species →	Homologous_superfamily	Kynurenine formamidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31118 all species →	CYCLASE-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004061 all species →	Molecular Function	arylformamidase activity	Interproscan
GO:0019441 all species →	Biological Process	tryptophan catabolic process to kynurenine	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011186-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011186-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

97TPM > 0

7Conditions

43.9Max TPM

8.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	6.64	26.65
polyp at pH7 6	18	14	5.71	26.66
coral polyp · control treatment	16	15	9.18	23.37
coral polyp · oil and dispersant treatment	16	14	10.73	32.66
coral polyp · oil treatment	16	15	11.81	36.32
coral polyp · dispersant treatment	16	16	9.80	43.88
Polyp	10	7	3.20	13.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.55
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.04
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.47
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.33
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.87
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.65
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.15
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.51
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.80
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.64
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.76
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.92
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.06
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.90
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.34
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.05
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.18
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.65
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.19
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.98
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.86
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.74
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.75
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.32
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.76
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.18
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.04
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.42
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.37
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.58
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.41
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.91
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.47
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.