Gene detail

Detailed information of OS493_011187-T1 in Lophelia pertusa

Genomic Location: scaffold_28:1378681...1381975
NR annotation: KAJ7373582.1, hypothetical protein OS493_011187 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0NLY7	Isatin hydrolase OS=Roseibium aggregatum (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC 16684 / NCIMB 2208 / IAM 12614 / B1) OX=384765 GN=SIAM614_09648 PE=1 SV=1
Q126P9	Kynurenine formamidase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) OX=296591 GN=kynB PE=3 SV=1
A9BVE1	Kynurenine formamidase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) OX=398578 GN=kynB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001409 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04199 all species →	Cyclase	Putative cyclase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007325 all species →	Family	Kynurenine formamidase/cyclase-like	Interproscan
IPR037175 all species →	Homologous_superfamily	Kynurenine formamidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31118 all species →	CYCLASE-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004061 all species →	Molecular Function	arylformamidase activity	Interproscan
GO:0019441 all species →	Biological Process	tryptophan catabolic process to kynurenine	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011187-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011187-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

49.9Max TPM

20.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.00	39.82
polyp at pH7 6	18	18	19.28	29.05
coral polyp · control treatment	16	16	21.24	42.13
coral polyp · oil and dispersant treatment	16	16	23.73	49.15
coral polyp · oil treatment	16	16	22.59	49.88
coral polyp · dispersant treatment	16	16	16.63	35.88
Polyp	10	9	14.51	35.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.17
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.51
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.57
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.31
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.35
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.45
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.41
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.05
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.21
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.05
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.90
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.92
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.78
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.44
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.42
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.83
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.02
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.28
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.42
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.03
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.51
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.87
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.33
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.34
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.33
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.24
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.16
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.10
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.52
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.35
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.88
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.29
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.32
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.53
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.76
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.33
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.75
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.77
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.60
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.71
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	35.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	28.11
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.55
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.60
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.51
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.99
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.