Gene detail

Detailed information of OS493_011242-T1 in Lophelia pertusa

Genomic Location: scaffold_28:1979095...1982369
NR annotation: KAJ7373633.1, hypothetical protein OS493_011242 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6INA9	Histone-lysine N-methyltransferase SETDB1 OS=Xenopus laevis OX=8355 GN=setdb1 PE=2 SV=1
Q15047	Histone-lysine N-methyltransferase SETDB1 OS=Homo sapiens OX=9606 GN=SETDB1 PE=1 SV=1
O88974	Histone-lysine N-methyltransferase SETDB1 OS=Mus musculus OX=10090 GN=Setdb1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002134 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856 all species →	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051516 all species →	Family	Histone-lysine N-methyltransferase SETDB	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR003616 all species →	Domain	Post-SET domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46024 all species →	HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010629 all species →	Biological Process	negative regulation of gene expression	Interproscan
GO:0046974 all species →	Molecular Function	histone H3K9 methyltransferase activity	Interproscan
GO:0051567 all species →	Biological Process	obsolete histone H3-K9 methylation	Interproscan
GO:0070828 all species →	Biological Process	heterochromatin organization	Interproscan
GO:0090309 all species →	Biological Process	obsolete positive regulation of DNA methylation-dependent heterochromatin formation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011242-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011242-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

60.9Max TPM

20.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.03	31.09
polyp at pH7 6	18	18	23.02	29.54
coral polyp · control treatment	16	16	23.33	33.51
coral polyp · oil and dispersant treatment	16	16	23.05	60.89
coral polyp · oil treatment	16	16	21.69	33.76
coral polyp · dispersant treatment	16	16	17.14	25.15
Polyp	10	10	11.13	26.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.09
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.14
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.98
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.25
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.58
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.07
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.71
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.41
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.96
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.90
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.68
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.54
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.08
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.39
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.46
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.37
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.53
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.96
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.52
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.39
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.35
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.21
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.04
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.71
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.77
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.40
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.61
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.96
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.48
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.66
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.03
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.50
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.46
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.45
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.76
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.17
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.76
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.16
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.02
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.39
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.70
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.57
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.12
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.04
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.58
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.25
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.27
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.85
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.11
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.72
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.40
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.46
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.06
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.44
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.83
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.80

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.