Gene detail

Detailed information of OS493_011307-T1 in Lophelia pertusa

Genomic Location: scaffold_28:2752477...2753457
NR annotation: KAJ7373698.1, Cation transport regulator-like protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P32656	Glutathione-specific gamma-glutamylcyclotransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GCG1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002270 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04752 all species →	ChaC	ChaC-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006840 all species →	Family	Glutathione-specific gamma-glutamylcyclotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12192 all species →	CATION TRANSPORT PROTEIN CHAC-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003839 all species →	Molecular Function	gamma-glutamylcyclotransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006751 all species →	Biological Process	glutathione catabolic process	Interproscan
GO:0061928 all species →	Molecular Function	glutathione specific gamma-glutamylcyclotransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011307-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011307-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

12.8Max TPM

4.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	4.95	11.93
polyp at pH7 6	18	16	3.96	9.13
coral polyp · control treatment	16	16	6.26	12.18
coral polyp · oil and dispersant treatment	16	16	5.06	12.75
coral polyp · oil treatment	16	16	4.70	10.64
coral polyp · dispersant treatment	16	16	4.61	10.91
Polyp	10	9	3.45	9.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.59
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.37
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.91
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.33
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.05
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.13
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.38
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.91
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.69
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.07
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.32
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.29
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.52
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.11
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.33
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.75
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.11
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.73
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.87
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.14
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.85
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.26
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.19
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.62
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.29
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.57
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.58
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.05
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.28
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.88
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.64
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.09
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.35
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.71
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.15
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.25
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.61
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.58
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.62
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.