Gene detail

Detailed information of OS493_011308-T1 in Lophelia pertusa

Genomic Location: scaffold_28:2755820...2761631
NR annotation: KAJ7373699.1, hypothetical protein OS493_011308 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007465 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15798 all species →	PRAS	Proline-rich AKT1 substrate 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026682 all species →	Family	Proline-rich AKT1 substrate 1 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21844 all species →	AKT1 SUBSTRATE 1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006469 all species →	Biological Process	negative regulation of protein kinase activity	Interproscan
GO:0032007 all species →	Biological Process	negative regulation of TOR signaling	Interproscan
GO:0048011 all species →	Biological Process	neurotrophin TRK receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16184	AKT1S1, PRAS40; proline-rich AKT1 substrate 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011308-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

52.2Max TPM

21.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.94	21.78
polyp at pH7 6	18	18	16.45	22.73
coral polyp · control treatment	16	16	25.46	49.31
coral polyp · oil and dispersant treatment	16	16	34.69	52.21
coral polyp · oil treatment	16	16	20.39	31.59
coral polyp · dispersant treatment	16	16	22.74	44.19
Polyp	10	10	12.87	21.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.78
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.40
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.34
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.09
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.94
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.19
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.42
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.40
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.73
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.29
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.23
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.19
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.87
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.75
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.54
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.29
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.47
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.37
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.07
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.14
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.88
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.17
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.50
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.57
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.22
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.94
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.13
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.85
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.45
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.53
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.54
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.72
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.51
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.38
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.39
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.25
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	21.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.88
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.74
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.48
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.70

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.