Gene detail

Detailed information of OS493_011328-T1 in Lophelia pertusa

Genomic Location: scaffold_28:2895365...2904670
NR annotation: KAJ7373719.1, Tetratricopeptide repeat protein 17 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_011328-T1

ATGTATGGTTTTAGTTTAGTATTTTATTTTATTTGGCTTGAAATTTTATGGTCGCAATCATTCTGCAAGGGAGCAACACACTGGATCGTCACAGAAGATGGCCGGATTCAACAGCAGGTTGACTCCATTTTCAATCTCAAACGACCATATGACCTGCTCACCTTTATTCAACAACAGACTGCGTCTGACAGGTTGAAGATTTTACGAGAAGAGTACCTCGAAGAGAAACGAAAAGTGATAGAAGCACGAGAGAAAGAAAGAGCTGAGTTACAAAAATCATTTTACAAAGAGGATCCAGATTGTATCGATGCAGGAAATCACATTTCTGAGTTTGAGCTGCATTTGGATATGACTCTTCCATTTGATAAGAAAGGCGTCAATATTCCAGACCATTTAAACCTTTGTCAGTCACTGCCATCACATGTTGAACCGCCAGTCTGTCGAGCTGTGTTACCGACTGTCATATACAGTTATGATCACCTTGATGGTGTCAATCGTCGGCATCAACTGAATGCGACCACAGAGCCAGGGCTGTTGTCAACATTGACATATTTTAAAACTATTGAAGAGTTAAAAGGTCATGTGAGTCTGGCACTAGAAAAGAATGCAAGTTCCTGGATTCTACTTAATCTTGCTGCATATTATTGGAGAATTAAAGGAAATGCTCCACAGGCCGTGGAATGTTTAAGACAAGCTTTATATTTCTCACCCAGCGAACATAAAGATCGTGCGTTGGTGAGTCTCGCTGCAGTTCTTCATCATGCAAACCACACGTTTGACTCACTGGTGCTACTCCACACTGCTCTCGACACTTGTGAGGAGTCGTTTTCTGTGTATCACTTTCTACTGGGAAATATCTATGCAAGGGTGAAAATGTATGAAATGGCTGAATTATGCTACAGATTTACTATAGCTGTATCACCAGACACTAAATCATTGTGCGAGCGATTAAAAGCCATCAGATGTGAACTGAAGTTGAAGCAGCTTCTAGAAGAACGACAATTAGTCTTTGATGAGAGATTGGACAGCCTTAAAACTCCTGAACTGGATGAACCTAAAGAATCTAGCAGTGCAGAAGCTGACAAGAAGCACTCCCTTCCTTTAGAAACATACAAGAGACAGCTTGATCGGCTGTACGTGCTTACGGATAGAATACCCAAGAACCCAGATACCTGTAAGAGCAGATCTGTTCCTGTCAAACAGGAAGTACATTTGCCTTCTGACGATACTGGAACAACAGAGAAACATGCAAGTCAACCTAGAAAGACAGAATCCAAGAAGTCAGCTCATAATCAACAAGATTCTAGCCACGGAAAAGAAAACGACAGCTCTGACATGCAGATTAAATCGCTAGAAAAGGCGAAATCCATGTCTGAAACTACCGAGGCTTCTACTGACTCTAAAACGAAAGTGAAGCCCAGCGATACAAACGATGTAAAGAACGGGAACACGATTTGGAAAGAAAACGGCAAAACAAGTGACACGCTCGAAGCAACAAATCCTCATTTAGAAAATTCTAGCGTCTCTGTGGAGGAGAAAACCATGCATGATCTTGAAGAGGCTCGGCTGGCGCTTAATCGCTTAAAAAACATCATTAAAACCGTTACACACGTCAATTCTGCGTCCCCAACTGAAGATAAAGAACTGCAGACCGAAGAGGATGCGAAGACAATTTCAAACAAACAGAGTTCAGTTAAAAGCTCGTCAAAAGTCCTCGAGAAAAAAAGTGAAGTTATTAAAAAGGGAAGCGCTGGACCTAAAGGACGGCGAGGAGAAAGCGGGTTGAAAATGTTGAAACGTGGCGCTACTGTGAATGCTCGTAGCAAAGAAGATTCCACCAGAACTGTTATCGTGGACGATGCTAAACTTGCCAAGCAAAAAGGAGAGTCTACATTGATGAGTAAGAACGGCCCGGGTGCGGCGAAATTTGACAAGTTTGCCTCCAAAAACACACGTCGAGAAATTTCGACCGCGGAGTTGCTGTTAGAGCAACCCAAAGGAAGTCTTTCTTCAGGTCCTAAACATACGCCGCCTCTGAAGGAAAAAGTTGCCTTAATCCAAGCCAGGAACTGTGAAAACCTTGGAAGGAAAAAGCGAAAAGGCGAGGCCTTCCCAGCGGAGTGTTTGACTCCAGATCACAGCAAACAAGCACAGAGCTCCAACACGGATGTAGCTATTGAGCAAGTTTTAACAACAACTGAATTTTCTAAAGCCGCAATCAACGAGAAATCTACCACAAGAAGCGATACTCCGCCATTAGATTCGGATGGCGAAGCGGTTTTAATGAAGCAAACATCTGCAGATGAAATTTCTGCTACAACTTCGTCAGATTCTAGTGCGAGTGAACGCACATCGGAAGCAAAGGTACTTAAAAAGAGCGACAATAAAACTGCTATTGCTGACGATGCTGTTAAAAGTAAAACCCGTGATAGCGAAGGCGAGGATATAAAAGGAGCTAGCGGGGCAAGCACAAAGGATGATAATAATCTTGAAGTAAAAACTGCGAAGGATGTTTCCATGAAAAGTAAAACCAGCGATAGAGAAATTGAGATTGGAAAGGCGACTAGTGGTAATGAAAATCCTGACGCGAAGGTTCTCGAAAAAAGCCAAAGGAAAACTTCTGTTGTGGAAGATGTTGCGAAAAGTAAAACCAGCGATAGCGAAATTGAGATTGAAAAGCAGCATGACCAGGAGACTACTTAA

Transcript

OS493_011328-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7F211	Tetratricopeptide repeat protein 17 OS=Danio rerio OX=7955 GN=ttc17 PE=3 SV=1
E9PVB5	Tetratricopeptide repeat protein 17 OS=Mus musculus OX=10090 GN=Ttc17 PE=1 SV=1
B5DEL3	Tetratricopeptide repeat protein 17 OS=Rattus norvegicus OX=10116 GN=Ttc17 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006530 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_011328-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052630 all species →	Family	Tetratricopeptide repeat protein 17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16091 all species →	TTC17 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011328-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_011328-T1 global co-expression network