Gene detail

Detailed information of OS493_011329-T1 in Lophelia pertusa

Genomic Location: scaffold_28:2906935...2910938
NR annotation: KAJ7373720.1, Lipase maturation factor 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P4Y8	Lipase maturation factor 2 OS=Xenopus tropicalis OX=8364 GN=lmf2 PE=2 SV=1
Q8C3X8	Lipase maturation factor 2 OS=Mus musculus OX=10090 GN=Lmf2 PE=1 SV=1
Q7ZWN0	Lipase maturation factor 2 OS=Xenopus laevis OX=8355 GN=lmf2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001525 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06762 all species →	LMF1	Lipase maturation factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009613 all species →	Family	Lipase maturation factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14463 all species →	LIPASE MATURATION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051604 all species →	Biological Process	protein maturation	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011329-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011329-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

29.4Max TPM

15.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.97	23.04
polyp at pH7 6	18	18	16.23	25.84
coral polyp · control treatment	16	16	15.64	29.36
coral polyp · oil and dispersant treatment	16	16	11.44	17.75
coral polyp · oil treatment	16	16	17.95	26.69
coral polyp · dispersant treatment	16	16	12.55	22.92
Polyp	10	9	15.61	28.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.28
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.06
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.24
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.95
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.54
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.27
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.04
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.82
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.92
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.47
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.44
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.27
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.84
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.26
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.09
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.41
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.99
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.59
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.44
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.85
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.80
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.75
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.45
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.81
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.79
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.16
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.45
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.71
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.11
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.18
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.17
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.06
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.60
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.32
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.32
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.35
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.64
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.82
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.90
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.03
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.56
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	28.96
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.58
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.48
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	16.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.16
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.70
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.86
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.