Gene detail

Detailed information of OS493_011334-T1 in Lophelia pertusa

Genomic Location: scaffold_28:2950725...2952981
NR annotation: KAJ7373725.1, ARF7 effector protein C-terminus [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q962R9	Small ribosomal subunit protein eS10 OS=Spodoptera frugiperda OX=7108 GN=RpS10 PE=2 SV=1
O13614	Small ribosomal subunit protein eS10B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rps1002 PE=1 SV=1
O14112	Small ribosomal subunit protein eS10A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rps1001 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009257 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14949 all species →	ARF7EP_C	ARF7 effector protein C-terminus	Family	Interproscan
PF03501 all species →	S10_plectin	Plectin/S10 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029264 all species →	Domain	ARF7 effector protein, C-terminal	Interproscan
IPR005326 all species →	Domain	Plectin/eS10, N-terminal	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR026515 all species →	Family	ARL14 effector protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46536 all species →	ARL14 EFFECTOR PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011334-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011334-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,056.1Max TPM

588.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	560.53	686.38
polyp at pH7 6	18	18	536.67	701.63
coral polyp · control treatment	16	16	632.65	871.20
coral polyp · oil and dispersant treatment	16	16	566.33	791.38
coral polyp · oil treatment	16	16	695.75	821.97
coral polyp · dispersant treatment	16	16	452.78	549.34
Polyp	10	10	744.16	1,056.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	686.38
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	677.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	649.80
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	649.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	646.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	645.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	644.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	642.98
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	631.85
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	566.57
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	493.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	493.79
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	486.21
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	484.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	442.44
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	426.11
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	410.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	410.51
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	701.63
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	699.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	663.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	656.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	649.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	645.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	637.33
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	628.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	572.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	571.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	455.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	446.25
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	395.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	393.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	388.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	388.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	386.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	379.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	871.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	845.43
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	756.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	750.68
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	699.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	673.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	654.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	651.72
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	576.47
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	575.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	566.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	561.30
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	561.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	525.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	457.39
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	396.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	791.38
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	680.84
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	634.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	630.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	612.64
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	545.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	541.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	541.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	538.95
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	537.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	537.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	533.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	504.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	496.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	486.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	449.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	821.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	820.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	797.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	793.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	752.47
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	728.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	720.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	713.16
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	701.43
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	666.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	662.32
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	649.55
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	635.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	592.24
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	568.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	506.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	549.34
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	541.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	497.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	496.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	491.90
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	488.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	458.21
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	447.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	446.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	444.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	433.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	427.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	401.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	386.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	380.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	353.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1,056.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	888.97
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	830.42
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	771.83
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	735.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	680.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	662.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	642.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	605.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	568.38

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.