Detailed information of OS493_011344-T1 in Lophelia pertusa

Genomic Location: scaffold_28:3012993...3015263
NR annotation: KAJ7373735.1, hypothetical protein OS493_011344 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q0C406Tryptophanase OS=Hyphomonas neptunium (strain ATCC 15444) OX=228405 GN=tnaA PE=3 SV=1
Q2S1V4Tryptophanase OS=Salinibacter ruber (strain DSM 13855 / M31) OX=309807 GN=tnaA PE=3 SV=1
O30971Tryptophanase OS=Rhodobacter capsulatus OX=1061 GN=tnaA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003246 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01212
all species →		Beta_elim_lyaseBeta-eliminating lyaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018176
all species →		Conserved_siteTryptophanase, conserved siteInterproscan
IPR015421
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR015424
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR015422
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR001597
all species →		DomainAromatic amino acid beta-eliminating lyase/threonine aldolaseInterproscan
IPR011166
all species →		FamilyBeta-eliminating lyase familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR32325
all species →		BETA-ELIMINATING LYASE-LIKE PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006520
all species →		Biological Processamino acid metabolic processInterproscan
GO:0016829
all species →		Molecular Functionlyase activityInterproscan
GO:0009072
all species →		Biological Processaromatic amino acid metabolic processInterproscan
GO:0016830
all species →		Molecular Functioncarbon-carbon lyase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_011344-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_011344-T1 global co-expression network
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