Gene detail

Detailed information of OS493_011345-T1 in Lophelia pertusa

Genomic Location: scaffold_28:3018737...3022544
NR annotation: KAJ7373736.1, LYR motif-containing protein 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5FXA0	Electron transfer flavoprotein regulatory factor 1 OS=Taeniopygia guttata OX=59729 GN=etfrf1 PE=3 SV=1
Q91V16	Electron transfer flavoprotein regulatory factor 1 OS=Mus musculus OX=10090 GN=Etfrf1 PE=1 SV=1
Q0VCR0	Electron transfer flavoprotein regulatory factor 1 OS=Bos taurus OX=9913 GN=ETFRF1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010232 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05347 all species →	Complex1_LYR	Complex 1 protein (LYR family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045296 all species →	Domain	ETFRF1, LYR domain	Interproscan
IPR008011 all species →	Domain	Complex 1 LYR protein domain	Interproscan
IPR052000 all species →	Family	Electron Transfer Flavoprotein Regulatory Factor 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21024 all species →	GROWTH HORMONE-INDUCIBLE SOLUBLE PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022904 all species →	Biological Process	respiratory electron transport chain	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011345-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011345-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

59.5Max TPM

24.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.53	59.54
polyp at pH7 6	18	18	27.80	41.22
coral polyp · control treatment	16	16	28.30	47.20
coral polyp · oil and dispersant treatment	16	16	21.53	29.83
coral polyp · oil treatment	16	16	25.83	46.31
coral polyp · dispersant treatment	16	16	10.27	21.45
Polyp	10	10	29.29	47.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.54
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.39
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.81
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.34
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.60
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.19
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.68
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.45
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.16
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.76
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.45
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.63
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.06
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.57
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.56
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.98
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.45
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.90
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.67
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.94
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.16
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.16
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.20
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.75
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.16
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.89
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.55
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.99
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.83
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.41
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.56
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.09
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.39
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.35
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.95
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.16
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.78
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.14
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.03
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.45
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.52
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.91
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.98
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.35
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.28
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.07
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.63
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	47.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	40.73
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	35.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	32.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	31.38
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	24.25
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	23.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.80
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	17.42

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.