Gene detail

Detailed information of OS493_011368-T1 in Lophelia pertusa

Genomic Location: scaffold_28:3355701...3362564
NR annotation: KAJ7373759.1, N-acetylgalactosamine kinase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XIG6	N-acetylgalactosamine kinase OS=Rattus norvegicus OX=10116 GN=Galk2 PE=2 SV=1
Q68FH4	N-acetylgalactosamine kinase OS=Mus musculus OX=10090 GN=Galk2 PE=1 SV=1
Q01415	N-acetylgalactosamine kinase OS=Homo sapiens OX=9606 GN=GALK2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005490 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08544 all species →	GHMP_kinases_C	GHMP kinases C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036554 all species →	Homologous_superfamily	GHMP kinase, C-terminal domain superfamily	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR013750 all species →	Domain	GHMP kinase, C-terminal domain	Interproscan
IPR006206 all species →	Family	Mevalonate/galactokinase	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10457 all species →	MEVALONATE KINASE/GALACTOKINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004335 all species →	Molecular Function	galactokinase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006012 all species →	Biological Process	galactose metabolic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0016773 all species →	Molecular Function	phosphotransferase activity, alcohol group as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011368-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011368-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

109.2Max TPM

64.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	84.96	102.04
polyp at pH7 6	18	18	70.84	89.74
coral polyp · control treatment	16	16	74.79	109.23
coral polyp · oil and dispersant treatment	16	16	44.39	76.40
coral polyp · oil treatment	16	16	64.75	105.68
coral polyp · dispersant treatment	16	16	44.21	73.09
Polyp	10	10	62.02	84.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	102.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	101.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	93.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	93.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	93.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	91.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.56
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.76
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.43
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.42
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.24
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.09
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.94
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.74
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.92
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.82
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.78
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.78
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.05
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.96
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.66
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.19
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.10
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.76
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.68
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.77
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.49
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.40
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.76
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.26
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.28
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.72
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.56
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.62
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.86
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	105.68
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.61
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.99
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.07
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.57
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.78
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.48
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.09
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.76
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.77
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.22
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.42
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.78
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.38
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.26
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.49
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.11
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.27
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	84.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	77.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	76.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	72.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	71.31
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	67.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	61.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	43.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	34.09
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	32.04

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.