Gene detail

Detailed information of OS493_011383-T1 in Lophelia pertusa

Genomic Location: scaffold_28:3548524...3552434
NR annotation: KAJ7373774.1, hypothetical protein OS493_011383 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009241 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_011383-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR051254 all species →	Family	Protein Phosphatase 1 Regulatory Subunit 15	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16489 all species →	GH11727P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000164 all species →	Cellular Component	protein phosphatase type 1 complex	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan
GO:0032516 all species →	Biological Process	obsolete positive regulation of phosphoprotein phosphatase activity	Interproscan
GO:0034976 all species →	Biological Process	response to endoplasmic reticulum stress	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011383-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011383-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

747.6Max TPM

112.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	27.53	39.87
polyp at pH7 6	18	18	34.52	59.15
coral polyp · control treatment	16	16	85.79	190.83
coral polyp · oil and dispersant treatment	16	16	162.49	372.52
coral polyp · oil treatment	16	16	68.58	132.72
coral polyp · dispersant treatment	16	16	366.31	747.57
Polyp	10	10	26.97	46.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.16
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.92
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.77
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.60
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.67
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.92
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.72
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.58
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.52
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.65
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.91
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.41
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.58
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.12
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.49
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.22
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.95
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	190.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	148.23
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	142.78
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.74
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	98.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.83
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.63
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.53
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.89
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	372.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	248.01
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	235.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	208.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	185.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	172.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	171.18
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	150.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	149.84
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	128.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.02
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.22
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.07
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	132.72
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.86
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.31
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.06
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.11
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	747.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	546.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	491.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	491.05
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	461.74
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	439.93
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	417.62
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	410.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	378.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	303.58
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	302.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	292.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	264.65
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	162.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.84
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	46.65
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	36.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	30.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	29.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	27.56
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	25.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.51
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	22.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.65

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.