Gene detail

Detailed information of OS493_011421-T1 in Lophelia pertusa

Genomic Location: scaffold_29:830370...834958
NR annotation: KAJ7363143.1, Insulin-induced protein 1 protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91WG1	Insulin-induced gene 2 protein OS=Mus musculus OX=10090 GN=Insig2 PE=1 SV=1
Q80UA9	Insulin-induced gene 2 protein OS=Rattus norvegicus OX=10116 GN=Insig2 PE=2 SV=1
Q5F3W2	Insulin-induced gene 2 protein OS=Gallus gallus OX=9031 GN=INSIG2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009501 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07281 all species →	INSIG	Insulin-induced protein (INSIG)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025929 all species →	Family	Insulin-induced protein family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15301 all species →	INSULIN-INDUCED GENE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006695 all species →	Biological Process	cholesterol biosynthetic process	Interproscan
GO:0016126 all species →	Biological Process	sterol biosynthetic process	Interproscan
GO:0032869 all species →	Biological Process	cellular response to insulin stimulus	Interproscan
GO:0032933 all species →	Biological Process	SREBP signaling pathway	Interproscan
GO:0032937 all species →	Cellular Component	SREBP-SCAP-Insig complex	Interproscan
GO:0036316 all species →	Biological Process	SREBP-SCAP complex retention in endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011421-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011421-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

36.9Max TPM

19.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.22	20.37
polyp at pH7 6	18	18	16.65	22.45
coral polyp · control treatment	16	16	25.28	36.45
coral polyp · oil and dispersant treatment	16	16	22.79	36.90
coral polyp · oil treatment	16	16	19.19	31.38
coral polyp · dispersant treatment	16	16	20.03	30.04
Polyp	10	10	12.42	19.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.37
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.35
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.35
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.80
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.78
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.35
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.58
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.94
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.61
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.18
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.45
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.61
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.66
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.11
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.11
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.35
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.96
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.59
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.86
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.45
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.39
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.27
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.46
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.79
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.70
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.93
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.05
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.54
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.92
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.34
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.79
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.78
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.04
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.12
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.85
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.81
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.11
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.16

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.