Gene detail

Detailed information of OS493_011426-T1 in Lophelia pertusa

Genomic Location: scaffold_29:906827...908810
NR annotation: KAJ7363148.1, Sperm-associated antigen 6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75602	Sperm-associated antigen 6 OS=Homo sapiens OX=9606 GN=SPAG6 PE=1 SV=1
Q9JLI7	Sperm-associated antigen 6 OS=Mus musculus OX=10090 GN=Spag6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007258 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_011426-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23314 all species →	SPERM-ASSOCIATED ANTIGEN 6 ARMADILLO REPEAT-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011426-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011426-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

120.1Max TPM

23.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.86	31.33
polyp at pH7 6	18	18	14.23	27.55
coral polyp · control treatment	16	16	37.07	120.06
coral polyp · oil and dispersant treatment	16	16	27.49	80.32
coral polyp · oil treatment	16	16	24.71	69.29
coral polyp · dispersant treatment	16	16	24.52	56.24
Polyp	10	10	18.25	32.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.01
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.94
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.75
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.14
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.39
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.06
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.85
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.36
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.29
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.26
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.55
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.12
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.28
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.46
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.35
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.67
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.94
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.46
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.21
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.48
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.14
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.19
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.32
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.84
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.58
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.79
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.14
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.37
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.45
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.60
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.57
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.13
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.24
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.97
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.88
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.71
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.40
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.07
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.97
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.39
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.12
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.54
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.48
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	32.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	25.28
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	23.38
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	21.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.33
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.73
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.44
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.12

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.