Gene detail

Detailed information of OS493_011427-T1 in Lophelia pertusa

Genomic Location: scaffold_29:910056...911535
NR annotation: KAJ7363149.1, Sperm-associated antigen 6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0085537 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_011427-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23314 all species →	SPERM-ASSOCIATED ANTIGEN 6 ARMADILLO REPEAT-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011427-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011427-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

84TPM > 0

7Conditions

64.0Max TPM

8.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	4.67	11.94
polyp at pH7 6	18	15	5.05	11.64
coral polyp · control treatment	16	13	14.55	63.95
coral polyp · oil and dispersant treatment	16	13	10.42	36.59
coral polyp · oil treatment	16	9	7.43	27.95
coral polyp · dispersant treatment	16	11	8.54	26.69
Polyp	10	7	4.62	12.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.19
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.46
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.96
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.04
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.15
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.51
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.57
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.35
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.63
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.65
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.43
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.95
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.55
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.68
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.29
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.59
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.34
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.96
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.52
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.84
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.17
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.46
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.58
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.51
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.85
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.69
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.67
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.50
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.24
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.54
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.47
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.93
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.