Gene detail

Detailed information of OS493_011428-T1 in Lophelia pertusa

Genomic Location: scaffold_29:913367...916147
NR annotation: KAJ7363150.1, Sperm-associated antigen 6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JLI7	Sperm-associated antigen 6 OS=Mus musculus OX=10090 GN=Spag6 PE=1 SV=1
O75602	Sperm-associated antigen 6 OS=Homo sapiens OX=9606 GN=SPAG6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007258 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23314 all species →	SPERM-ASSOCIATED ANTIGEN 6 ARMADILLO REPEAT-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011428-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011428-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

93.0Max TPM

15.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.48	16.36
polyp at pH7 6	18	18	7.53	12.61
coral polyp · control treatment	16	16	23.07	79.67
coral polyp · oil and dispersant treatment	16	16	22.16	92.99
coral polyp · oil treatment	16	16	14.92	33.12
coral polyp · dispersant treatment	16	16	22.67	41.67
Polyp	10	9	7.25	13.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.93
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.49
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.16
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.82
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.57
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.23
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.51
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.45
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.19
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.56
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.17
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.60
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.53
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.40
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.59
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.97
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.39
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.58
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.11
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.95
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.59
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.02
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.60
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.51
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.61
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.09
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.25
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.73
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.30
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.49
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.16
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.03
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.77
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.71
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.81
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.24
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.52
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.02
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.73
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.46
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.41
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.92
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.81
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.86
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.72
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.83
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.96
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.77
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.