Gene detail

Detailed information of OS493_011468-T1 in Lophelia pertusa

Genomic Location: scaffold_29:1528962...1531600
NR annotation: KAJ7363188.1, EF-hand calcium-binding domain-containing protein 10 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6NFE3	EF-hand calcium-binding domain-containing protein 10 OS=Homo sapiens OX=9606 GN=EFCAB10 PE=1 SV=2
Q9D581	EF-hand calcium-binding domain-containing protein 10 OS=Mus musculus OX=10090 GN=Efcab10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006548 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_011468-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR049760 all species →	Domain	EF-hand calcium-binding domain-containing protein 10, dimerization/docking domain	Interproscan
IPR039879 all species →	Family	EF-hand calcium-binding domain-containing protein 10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21847 all species →	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011468-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011468-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

177.9Max TPM

24.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.08	42.06
polyp at pH7 6	18	18	19.84	39.15
coral polyp · control treatment	16	16	29.36	132.42
coral polyp · oil and dispersant treatment	16	16	26.13	177.88
coral polyp · oil treatment	16	16	21.67	37.00
coral polyp · dispersant treatment	16	16	16.71	32.06
Polyp	10	10	41.66	69.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.06
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.02
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.82
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.37
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.15
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.57
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.19
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.76
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.01
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.99
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.48
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.36
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.04
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	132.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.68
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.91
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.97
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.82
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	177.88
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.94
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.62
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.38
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.87
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.32
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.72
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.82
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.22
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.15
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.14
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.74
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.87
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.95
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.08
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.11
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	69.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	63.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	62.59
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	42.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	35.06
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	35.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	34.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.32
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.80

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.