Gene detail

Detailed information of OS493_011469-T1 in Lophelia pertusa

Genomic Location: scaffold_29:1531745...1533208
NR annotation: KAJ7363189.1, hypothetical protein OS493_011469 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5I0M0	Histone-lysine N-methyltransferase SETMAR OS=Rattus norvegicus OX=10116 GN=Setmar PE=2 SV=1
Q0VD24	Histone-lysine N-methyltransferase SETMAR OS=Bos taurus OX=9913 GN=SETMAR PE=2 SV=1
Q80UJ9	Histone-lysine N-methyltransferase SETMAR OS=Mus musculus OX=10090 GN=Setmar PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001185 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05033 all species →	Pre-SET	Pre-SET motif	Family	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007728 all species →	Domain	Pre-SET domain	Interproscan
IPR050973 all species →	Family	Histone-lysine N-methyltransferase, H3 Lys-9 specific	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR003616 all species →	Domain	Post-SET domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46223 all species →	HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011469-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011469-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

12.3Max TPM

1.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	14	1.18	2.85
polyp at pH7 6	18	15	1.24	3.88
coral polyp · control treatment	16	16	1.71	8.41
coral polyp · oil and dispersant treatment	16	15	1.74	12.26
coral polyp · oil treatment	16	16	1.53	2.74
coral polyp · dispersant treatment	16	16	0.59	1.85
Polyp	10	10	1.42	3.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.58
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.29
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.22
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.11
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.94
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.46
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.27
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.01
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.81
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.41
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.51
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.95
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.26
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.79
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.87
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.74
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.92
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.86
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.68
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.59
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.55
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.17
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.23
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.07

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.