Detailed information of OS493_011547-T1 in Lophelia pertusa

Genomic Location: scaffold_29:2326089...2345728
NR annotation: KAJ7363265.1, hypothetical protein OS493_011547 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q69ZR9Protein TASOR OS=Mus musculus OX=10090 GN=Tasor PE=1 SV=2
Q9UK61Protein TASOR OS=Homo sapiens OX=9606 GN=TASOR PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003273 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12509
all species →
DUF3715Protein of unknown function (DUF3715)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR046432
all species →
FamilyTASORInterproscan
IPR022188
all species →
DomainTASOR, DUF3715Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16207
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005654
all species →
Cellular ComponentnucleoplasmInterproscan
GO:0045814
all species →
Biological Processnegative regulation of gene expression, epigeneticInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_011547-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011547-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples
110TPM > 0
7Conditions
45.4Max TPM
6.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
polyp at pH7 9 18 18 6.61 10.85
polyp at pH7 6 18 18 6.34 9.97
coral polyp · control treatment 16 16 9.77 45.41
coral polyp · oil and dispersant treatment 16 16 6.76 26.55
coral polyp · oil treatment 16 16 6.29 14.29
coral polyp · dispersant treatment 16 16 5.50 16.55
Polyp 10 10 1.07 2.12

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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