Gene detail

Detailed information of OS493_011554-T1 in Lophelia pertusa

Genomic Location: scaffold_29:2427463...2438047
NR annotation: KAJ7363272.1, Suppressor of tumorigenicity 7 protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7S641	Protein ST7 homolog OS=Nematostella vectensis OX=45351 GN=v1g243132 PE=3 SV=1
A0M8U1	Suppressor of tumorigenicity 7 protein homolog OS=Gallus gallus OX=9031 GN=ST7 PE=3 SV=1
Q2IBD0	Suppressor of tumorigenicity 7 protein OS=Rattus norvegicus OX=10116 GN=St7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005945 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04184 all species →	ST7	ST7 protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007311 all species →	Family	ST7	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12745 all species →	SUPPRESSION OF TUMORIGENICITY 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011554-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011554-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

61.7Max TPM

14.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.68	20.45
polyp at pH7 6	18	18	15.80	24.85
coral polyp · control treatment	16	16	17.73	61.69
coral polyp · oil and dispersant treatment	16	16	15.95	50.51
coral polyp · oil treatment	16	16	14.39	20.99
coral polyp · dispersant treatment	16	16	11.16	16.37
Polyp	10	10	11.48	23.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.45
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.01
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.75
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.70
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.43
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.10
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.54
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.70
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.55
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.06
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.78
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.73
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.65
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.07
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.50
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.20
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.99
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.73
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.02
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.51
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.80
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.44
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.03
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.41
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.78
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.43
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.99
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.66
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.31
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.37
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.03
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.79
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.68
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.26
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.50
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.78
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.02
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.71
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.03
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.48
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.68
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.28

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.