Gene detail

Detailed information of OS493_011560-T1 in Lophelia pertusa

Genomic Location: scaffold_29:2556759...2557996
NR annotation: KAJ7363277.1, hypothetical protein OS493_011560 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O18404	3-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophila melanogaster OX=7227 GN=scu PE=1 SV=1
O02691	3-hydroxyacyl-CoA dehydrogenase type-2 OS=Bos taurus OX=9913 GN=HSD17B10 PE=1 SV=3
Q99714	3-hydroxyacyl-CoA dehydrogenase type-2 OS=Homo sapiens OX=9606 GN=HSD17B10 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003026 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43658 all species →	SHORT-CHAIN DEHYDROGENASE/REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004303 all species →	Molecular Function	estradiol 17-beta-dehydrogenase [NAD(P)+] activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0008209 all species →	Biological Process	androgen metabolic process	Interproscan
GO:0008210 all species →	Biological Process	estrogen metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011560-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011560-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

88TPM > 0

7Conditions

12.7Max TPM

3.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	3.59	8.44
polyp at pH7 6	18	9	2.28	9.58
coral polyp · control treatment	16	16	4.01	7.45
coral polyp · oil and dispersant treatment	16	13	2.40	6.12
coral polyp · oil treatment	16	15	4.56	9.64
coral polyp · dispersant treatment	16	15	3.02	9.56
Polyp	10	7	3.20	12.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.25
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.58
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.21
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.93
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.59
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.67
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.40
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.50
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.92
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.87
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.49
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.64
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.14
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.78
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.64
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.69
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.28
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.16
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.86
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.81
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.54
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.56
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.93
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.12
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.82
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.32
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.02
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.