Gene detail

Detailed information of OS493_011569-T1 in Lophelia pertusa

Genomic Location: scaffold_29:2612351...2624826
NR annotation: KAJ7363286.1, hypothetical protein OS493_011569 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A1B0GTI8	Transmembrane protein 272 OS=Homo sapiens OX=9606 GN=TMEM272 PE=2 SV=3
Q9ER47	Voltage-gated inwardly rectifying potassium channel KCNH7 OS=Mus musculus OX=10090 GN=Kcnh7 PE=1 SV=2
O54852	Voltage-gated inwardly rectifying potassium channel KCNH7 OS=Rattus norvegicus OX=10116 GN=Kcnh7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000930 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_011569-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR040350 all species →	Family	Transmembrane protein 272	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33444 all species →	SI:DKEY-19B23.12-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_011569-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011569-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011569-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

19.1Max TPM

5.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.95	9.37
polyp at pH7 6	18	17	6.35	10.49
coral polyp · control treatment	16	16	6.86	19.12
coral polyp · oil and dispersant treatment	16	16	4.56	9.32
coral polyp · oil treatment	16	16	4.90	8.14
coral polyp · dispersant treatment	16	16	4.69	8.48
Polyp	10	10	5.80	13.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.18
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.47
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.58
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.34
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.88
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.30
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.12
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.63
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.37
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.24
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.36
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.18
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.62
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.49
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.32
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.45
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.22
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.87
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.83
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.32
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.46
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.14
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.41
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.29
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.74
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.24
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.49
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.89
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.01
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.48
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.88
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.56
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.28
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.22
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.25
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.77
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.53
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.15

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.