Gene detail

Detailed information of OS493_011571-T1 in Lophelia pertusa

Genomic Location: scaffold_29:2647735...2653622
NR annotation: KAJ7363288.1, hypothetical protein OS493_011571 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000930 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_011571-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR040350 all species →	Family	Transmembrane protein 272	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33444 all species →	SI:DKEY-19B23.12-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_011571-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011571-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011571-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

143.4Max TPM

75.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	57.96	79.20
polyp at pH7 6	18	18	63.59	96.70
coral polyp · control treatment	16	16	93.11	127.12
coral polyp · oil and dispersant treatment	16	16	95.55	139.89
coral polyp · oil treatment	16	16	77.64	114.23
coral polyp · dispersant treatment	16	16	88.29	143.36
Polyp	10	10	39.66	67.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.72
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.74
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.12
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.62
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.26
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.70
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.25
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.75
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.68
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.63
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.38
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.64
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.19
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.35
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.27
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	127.12
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	121.96
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	117.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.32
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.27
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	106.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	139.89
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	138.66
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.32
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.21
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.98
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.38
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.91
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	114.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	110.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	110.28
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	106.55
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.46
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.81
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.49
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.94
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.06
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	143.36
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	139.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.98
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.41
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.03
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.07
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.19
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.38
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	67.64
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	61.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	60.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	44.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	34.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	33.58
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.84
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	27.99
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	21.81
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.58

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.