Gene detail

Detailed information of OS493_011578-T1 in Lophelia pertusa

Genomic Location: scaffold_29:2688276...2690643
NR annotation: KAJ7363294.1, hypothetical protein OS493_011578 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NVM9	Integrator complex subunit 13 OS=Homo sapiens OX=9606 GN=INTS13 PE=1 SV=2
Q8QZV7	Integrator complex subunit 13 OS=Mus musculus OX=10090 GN=IntS13 PE=1 SV=2
Q6DIK0	Integrator complex subunit 13 OS=Xenopus tropicalis OX=8364 GN=ints13 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004150 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10221 all species →	Mat89Bb	Cell cycle and development regulator Mat89Bb	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019355 all species →	Family	Cell cycle regulator Mat89Bb	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12955 all species →	SARCOMA ANTIGEN NY-SAR-95-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007346 all species →	Biological Process	regulation of mitotic cell cycle	Interproscan
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0051642 all species →	Biological Process	centrosome localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011578-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011578-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

103TPM > 0

7Conditions

18.1Max TPM

5.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	4.52	8.74
polyp at pH7 6	18	14	4.66	9.78
coral polyp · control treatment	16	16	7.89	18.05
coral polyp · oil and dispersant treatment	16	16	6.04	11.55
coral polyp · oil treatment	16	16	6.98	11.87
coral polyp · dispersant treatment	16	16	4.26	9.90
Polyp	10	9	4.12	6.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.44
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.33
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.78
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.54
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.39
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.39
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.15
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.88
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.57
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.80
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.76
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.93
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.37
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.47
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.70
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.17
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.94
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.19
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.28
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.23
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.80
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.23
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.98
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.36
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.15
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.57
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.66
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.34
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.24
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.77
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.62
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.