Gene detail

Detailed information of OS493_011636-T1 in Lophelia pertusa

Genomic Location: scaffold_29:3207336...3207641
NR annotation: KAJ7363348.1, hypothetical protein OS493_011636 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O49447	ADP,ATP carrier protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=AAC3 PE=1 SV=1
P25083	ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum OX=4113 GN=ANT PE=2 SV=1
P27081	ADP,ATP carrier protein, mitochondrial (Fragment) OS=Solanum tuberosum OX=4113 GN=ANT1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002810 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002113 all species →	Family	ADP/ATP carrier protein, eukaryotic type	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45635 all species →	ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005471 all species →	Molecular Function	ATP:ADP antiporter activity	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0140021 all species →	Biological Process	mitochondrial ADP transmembrane transport	Interproscan
GO:1901029 all species →	Biological Process	negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway	Interproscan
GO:1990544 all species →	Biological Process	mitochondrial ATP transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011636-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011636-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

314.3Max TPM

58.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	103.60	173.31
polyp at pH7 6	18	18	119.86	314.32
coral polyp · control treatment	16	16	42.97	112.31
coral polyp · oil and dispersant treatment	16	16	32.00	94.56
coral polyp · oil treatment	16	16	38.33	115.63
coral polyp · dispersant treatment	16	16	26.54	98.58
Polyp	10	10	21.44	48.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	173.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	167.40
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	166.16
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	160.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	155.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	150.10
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.94
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	93.52
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.55
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.67
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.69
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.82
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.57
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.23
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.79
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.35
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	314.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	304.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	218.42
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	196.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	177.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	157.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.82
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.32
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.08
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.71
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.18
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.72
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.60
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	112.31
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.79
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.26
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.99
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.22
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.06
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.70
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.63
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.96
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.30
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	115.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.94
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.04
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.56
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.15
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.58
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.98
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.84
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.06
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.58
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.54
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.40
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.76
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.58
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	48.41
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	35.87
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	27.72
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	24.09
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	18.79
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.20
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.60
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.30
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.57

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.