Gene detail

Detailed information of OS493_011664-T1 in Lophelia pertusa

Genomic Location: scaffold_29:3392826...3393848
NR annotation: KAJ7363376.1, hypothetical protein OS493_011664 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N9Y4	Protein FAM181A OS=Homo sapiens OX=9606 GN=FAM181A PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010252 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15238 all species →	FAM181	FAM181	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029359 all species →	Family	FAM181	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33766 all species →	PROTEIN FAM181B	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_011664-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_011664-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_011664-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

47.9Max TPM

12.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.79	24.79
polyp at pH7 6	18	18	11.36	20.97
coral polyp · control treatment	16	16	10.40	15.93
coral polyp · oil and dispersant treatment	16	16	9.03	21.14
coral polyp · oil treatment	16	16	10.48	19.10
coral polyp · dispersant treatment	16	16	20.77	47.92
Polyp	10	10	15.28	37.91

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.79
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.05
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.20
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.39
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.05
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.01
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.96
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.36
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.41
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.48
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.29
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.55
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.72
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.60
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.93
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.89
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.45
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.37
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.07
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.91
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.22
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.87
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.04
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.67
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.33
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.97
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.40
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.09
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.36
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.23
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.36
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.38
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.92
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.17
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.80
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.99
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.44
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.88
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	37.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.93
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.64
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.32
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.95
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.47

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.